4MGW

Comparison of the structural and dynamic effects of 5-methylcytosine and 5-chlorocytosine in a CpG dinucleotide sequence

Structural Biology Knowledgebase: 4MGW SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.93 Å
  • R-Value Free: 0.263
  • R-Value Work: 0.196

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4MGW

Classification: DNA

Total Structure Weight: 7416.01

Macromolecule Entities
Molecule Chains Length Organism Details
ClC containing Dickerson-Drew dodecamer A, B 12 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
2GF
Query on 2GF
A, B DNA LINKING C9 H11 Cl N3 O7 P --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.93 Å
  • R-Value Free: 0.263
  • R-Value Work: 0.196
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 24.63 α = 90.00
b = 39.92 β = 90.00
c = 65.36 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2013-08-29
  • Released Date: 2013-11-06
  • Deposition author(s): Theruvathu, J.A., Whitney, Y., Montgomery Pettitt, B., Sowers, L.C.

Revision History

  • 2013-12-11
    Type: Citation | Details: Citation update