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ALKBH2 R110A cross-linked to undamaged dsDNA
DOI:10.2210/pdb4mgt/pdb   NDB ID: NA2712
4MGT
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Oxidoreductase/dna
    Structure Weight: 31570.57
    Molecule: Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2
    Polymer: 1 Type: protein Length: 205
    Chains: A
    EC#: 1.14.11.33   
    Fragment: UNP residues 56-258
    Mutation: R110A
    Organism: Homo sapiens
    Gene Names: Gene View for ALKBH2 ABH2
    UniProtKB: Protein Feature View | Search PDB | Q6NS38  
    Molecule: DNA1
    Polymer: 2 Type: dna Length: 14
    Chains: B
    Molecule: DNA2
    Polymer: 3 Type: dna Length: 13
    Chains: C
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    4MG2   
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    MG
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    MG Mg
    MAGNESIUM ION
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    2YR
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    2YR C11 H18 N3 O7 P S nonPolymer
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: NA2712
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Chen, B.,  Gan, J.,  Yang, C.G.

    Deposition:   2013-08-28
    Release:   2014-02-26
    Last Modified (REVDAT):   2014-05-28
     
  •   Revision History    Hide
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    2014-05-28
    Non-polymer description
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.60
    R-Value: 0.233 (obs.)
    R-Free: 0.276
    Space Group: P 63 2 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 129.10 α = 90.00 
    b = 129.10 β = 90.00 
    c = 84.47 γ = 120.00