4M9L

DNA Polymerase Beta E295K Soaked with dCTP

Structural Biology Knowledgebase: 4M9L SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.09 Å
  • R-Value Free: 0.231
  • R-Value Work: 0.189

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4M9L

Classification: TRANSFERASE / DNA

Total Structure Weight: 48252.82


Macromolecule Entities
Molecule Chains Length Organism Details
DNA polymerase beta A 335 Homo sapiens EC#: 2.7.7.7 IUBMB 4.2.99 IUBMB
Mutation: E295K
Gene Name(s): POLB Gene View
Macromolecule Entities
Molecule Chains Length Organism Details
DNA Template Strand T 16 synthetic
DNA Primer Strand P 10 synthetic
DNA Downstream Strand D 5 synthetic

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DCP
Query on DCP

A 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE
C9 H16 N3 O13 P3
RGWHQCVHVJXOKC-SHYZEUOFSA-N
Ligand Explorer
 
JSmol
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.09 Å
  • R-Value Free: 0.231
  • R-Value Work: 0.189
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 54.36 α = 90.00
b = 80.20 β = 108.59
c = 54.60 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-08-14
  • Released Date: 2013-10-16
  • Deposition author(s): Eckenroth, B.E., Doublie, S.

Revision History

  • 2013-12-18
    Type: Citation | Details: Citation update
  • 2013-10-30
    Type: Citation | Details: Citation update