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Crystal structure of the N-terminally acetylated BAH domain of Sir3 bound to the nucleosome core particle
DOI:10.2210/pdb4ld9/pdb   NDB ID: NA2564
4LD9
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Nuclear Protein/transcription/dna
    Structure Weight: 269081.10
    Molecule: Histone H3.2
    Polymer: 1 Type: protein Length: 136
    Chains: A, E
    Organism: Xenopus laevis
    UniProtKB: Protein Feature View | Search PDB | P84233  
    Molecule: Histone H4
    Polymer: 2 Type: protein Length: 103
    Chains: B, F
    Organism: Xenopus laevis
    UniProtKB: Protein Feature View | Search PDB | P62799  
    Molecule: Histone H2A
    Polymer: 3 Type: protein Length: 130
    Chains: C, G
    Organism: Xenopus laevis
    UniProtKB: Protein Feature View | Search PDB | P06897  
    Molecule: Histone H2B 1.1
    Polymer: 4 Type: protein Length: 126
    Chains: D, H
    Organism: Xenopus laevis
    UniProtKB: Protein Feature View | Search PDB | P02281  
    Molecule: Widom 601 sequence reverse
    Polymer: 5 Type: dna Length: 167
    Chains: I
    Molecule: Widom 601 sequence forward
    Polymer: 6 Type: dna Length: 167
    Chains: J
    Molecule: Regulatory protein SIR3
    Polymer: 7 Type: protein Length: 236
    Chains: K, L
    Organism: Saccharomyces cerevisiae S288c
    Gene Names: SIR3 CMT1 MAR2 STE8 YLR442C L9753.10
    UniProtKB: Protein Feature View | Search PDB | P06701  
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Xenopus laevis   Taxonomy   Common Name: Clawed frog,common platanna,platanna Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Xenopus laevis   Taxonomy   Common Name: Clawed frog,common platanna,platanna Expression System: Escherichia coli  
    Polymer: 3
    Scientific Name: Xenopus laevis   Taxonomy   Common Name: Clawed frog,common platanna,platanna Expression System: Escherichia coli  
    Polymer: 4
    Scientific Name: Xenopus laevis   Taxonomy   Common Name: Clawed frog,common platanna,platanna Expression System: Escherichia coli  
    Polymer: 5
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 6
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 7
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast Expression System: Spodoptera frugiperda  
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    ACE
    Search 
    ACE C2 H4 O nonPolymer
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: NA2564
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors
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