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Crystal structure of Zalpha domain from Carassius auratus PKZ in complex with Z-DNA
DOI:10.2210/pdb4kmf/pdb   NDB ID: NA2424
4KMF
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transferase/dna
    Structure Weight: 9367.63
    Molecule: Interferon-inducible and double-stranded-dependent eIF-2kinase
    Polymer: 1 Type: protein Length: 62
    Chains: A
    Organism: Carassius auratus
    UniProtKB: Protein Feature View | Search PDB | Q7T2M9  
    Molecule: DNA (5'-D(*TP*CP*GP*CP*GP*CP*G)-3')
    Polymer: 2 Type: dna Length: 7
    Chains: B
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Carassius auratus   Taxonomy   Common Name: Goldfish Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    MN
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    MN Mn
    MANGANESE (II) ION
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: NA2424
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Kim, D.,  Kim, K.K.

    Deposition:   2013-05-08
    Release:   2013-07-03
    Last Modified (REVDAT):   2014-06-18
     
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    2014-06-18
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   1.70
    R-Value: 0.173 (obs.)
    R-Free: 0.227
    Space Group: C 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 55.37 α = 90.00 
    b = 49.47 β = 97.22 
    c = 29.58 γ = 90.00