4KMF

Crystal structure of Zalpha domain from Carassius auratus PKZ in complex with Z-DNA

Structural Biology Knowledgebase: 4KMF SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.170

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4KMF

Classification: TRANSFERASE / DNA

Total Structure Weight: 9367.63


Macromolecule Entities
Molecule Chains Length Organism Details
Interferon-inducible and double-stranded-dependent eIF-2kinase A 62 Carassius auratus Gene Name(s):
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*TP*CP*GP*CP*GP*CP*G)-3') B 7 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MN
Query on MN

B MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.170
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 55.37 α = 90.00
b = 49.47 β = 97.22
c = 29.58 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-05-08
  • Released Date: 2013-07-03
  • Deposition author(s): Kim, D., Kim, K.K.

Revision History

  • 2014-06-18
    Type: Citation | Details: Citation update