Control of ribosomal subunit rotation by elongation factor G
DOI:10.2210/pdb4kiz/pdb   NDB ID: NA2521
4KIZ
Split Entry
The asymmetric unit for this structure is composed of multiple PDB entries:
4KIX    4KIY    4KIZ    4KJ0    4KJ1    4KJ2    4KJ3    4KJ4   
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The complete entry has been assigned PDB ID 4V9O and is available for download in PDBx/mmCIF and PDBML/XML formats from the FTP archive at:
ftp://ftp.wwpdb.org/pub/pdb/data/large_structures/mmCIF/4v9o.cif.gz
ftp://ftp.wwpdb.org/pub/pdb/data/large_structures/XML/4v9o.xml.gz
 
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Ribosome
    Structure Weight: 1368518.20
    Molecule: 5S rRNA
    Polymer: 1 Type: rna Length: 120
    Chains: B
    Organism: Escherichia coli K-12
    Molecule: 23S rRNA
    Polymer: 2 Type: rna Length: 2904
    Chains: A
    Organism: Escherichia coli K-12
    Molecule: 50S ribosomal protein L2
    Polymer: 3 Type: protein Length: 273
    Chains: C
    Organism: Escherichia coli K-12
    Gene Names: rplB b3317 JW3279
    UniProtKB: Protein Feature View | Search PDB | P60422  
    Molecule: 50S ribosomal protein L3
    Polymer: 4 Type: protein Length: 209
    Chains: D
    Organism: Escherichia coli K-12
    Gene Names: rplC b3320 JW3282
    UniProtKB: Protein Feature View | Search PDB | P60438  
    Molecule: 50S ribosomal protein L4
    Polymer: 5 Type: protein Length: 201
    Chains: E
    Organism: Escherichia coli K-12
    Gene Names: rplD eryA b3319 JW3281
    UniProtKB: Protein Feature View | Search PDB | P60723  
    Molecule: 50S ribosomal protein L5
    Polymer: 6 Type: protein Length: 179
    Chains: F
    Organism: Escherichia coli K-12
    Gene Names: rplE b3308 JW3270
    UniProtKB: Protein Feature View | Search PDB | P62399  
    Molecule: 50S ribosomal protein L6
    Polymer: 7 Type: protein Length: 177
    Chains: G
    Organism: Escherichia coli K-12
    Gene Names: rplF b3305 JW3267
    UniProtKB: Protein Feature View | Search PDB | P0AG55  
    Molecule: 50S ribosomal protein L9
    Polymer: 8 Type: protein Length: 50
    Chains: H
    Organism: Escherichia coli K-12
    Gene Names: rplI b4203 JW4161
    UniProtKB: Protein Feature View | Search PDB | P0A7R1  
    Molecule: 50S ribosomal protein L11
    Polymer: 9 Type: protein Length: 142
    Chains: I
    Organism: Escherichia coli K-12
    Gene Names: rplK relC b3983 JW3946
    UniProtKB: Protein Feature View | Search PDB | P0A7J7  
    Molecule: 50S ribosomal protein L13
    Polymer: 10 Type: protein Length: 142
    Chains: J
    Organism: Escherichia coli K-12
    Gene Names: rplM b3231 JW3200
    UniProtKB: Protein Feature View | Search PDB | P0AA10  
    Molecule: 50S ribosomal protein L14
    Polymer: 11 Type: protein Length: 123
    Chains: K
    Organism: Escherichia coli K-12
    Gene Names: rplN b3310 JW3272
    UniProtKB: Protein Feature View | Search PDB | P0ADY3  
    Molecule: 50S ribosomal protein L15
    Polymer: 12 Type: protein Length: 144
    Chains: L
    Organism: Escherichia coli K-12
    Gene Names: rplO b3301 JW3263
    UniProtKB: Protein Feature View | Search PDB | P02413  
    Molecule: 50S ribosomal protein L16
    Polymer: 13 Type: protein Length: 136
    Chains: M
    Organism: Escherichia coli K-12
    Gene Names: rplP b3313 JW3275
    UniProtKB: Protein Feature View | Search PDB | P0ADY7  
    Molecule: 50S ribosomal protein L17
    Polymer: 14 Type: protein Length: 127
    Chains: N
    Organism: Escherichia coli K-12
    Gene Names: rplQ b3294 JW3256
    UniProtKB: Protein Feature View | Search PDB | P0AG44  
    Molecule: 50S ribosomal protein L18
    Polymer: 15 Type: protein Length: 117
    Chains: O
    Organism: Escherichia coli K-12
    Gene Names: rplR b3304 JW3266
    UniProtKB: Protein Feature View | Search PDB | P0C018  
    Molecule: 50S ribosomal protein L19
    Polymer: 16 Type: protein Length: 115
    Chains: P
    Organism: Escherichia coli K-12
    Gene Names: rplS b2606 JW2587
    UniProtKB: Protein Feature View | Search PDB | P0A7K6  
    Molecule: 50S ribosomal protein L20
    Polymer: 17 Type: protein Length: 118
    Chains: Q
    Organism: Escherichia coli K-12
    Gene Names: rplT pdzA b1716 JW1706
    UniProtKB: Protein Feature View | Search PDB | P0A7L3  
    Molecule: 50S ribosomal protein L21
    Polymer: 18 Type: protein Length: 103
    Chains: R
    Organism: Escherichia coli K-12
    Gene Names: rplU b3186 JW3153
    UniProtKB: Protein Feature View | Search PDB | P0AG48  
    Molecule: 50S ribosomal protein L22
    Polymer: 19 Type: protein Length: 110
    Chains: S
    Organism: Escherichia coli K-12
    Gene Names: rplV eryB b3315 JW3277
    UniProtKB: Protein Feature View | Search PDB | P61175  
    Molecule: 50S ribosomal protein L23
    Polymer: 20 Type: protein Length: 100
    Chains: T
    Organism: Escherichia coli K-12
    Gene Names: rplW b3318 JW3280
    UniProtKB: Protein Feature View | Search PDB | P0ADZ0  
    Molecule: 50S ribosomal protein L24
    Polymer: 21 Type: protein Length: 104
    Chains: U
    Organism: Escherichia coli K-12
    Gene Names: rplX b3309 JW3271
    UniProtKB: Protein Feature View | Search PDB | P60624  
    Molecule: 50S ribosomal protein L25
    Polymer: 22 Type: protein Length: 94
    Chains: V
    Organism: Escherichia coli K-12
    Gene Names: rplY b2185 JW2173
    UniProtKB: Protein Feature View | Search PDB | P68919  
    Molecule: 50S ribosomal protein L27
    Polymer: 23 Type: protein Length: 85
    Chains: W
    Organism: Escherichia coli K-12
    Gene Names: rpmA b3185 JW3152
    UniProtKB: Protein Feature View | Search PDB | P0A7L8  
    Molecule: 50S ribosomal protein L28
    Polymer: 24 Type: protein Length: 78
    Chains: X
    Organism: Escherichia coli K-12
    Gene Names: rpmB b3637 JW3612
    UniProtKB: Protein Feature View | Search PDB | P0A7M2  
    Molecule: 50S ribosomal protein L29
    Polymer: 25 Type: protein Length: 63
    Chains: Y
    Organism: Escherichia coli K-12
    Gene Names: rpmC b3312 JW3274
    UniProtKB: Protein Feature View | Search PDB | P0A7M6  
    Molecule: 50S ribosomal protein L30
    Polymer: 26 Type: protein Length: 59
    Chains: Z
    Organism: Escherichia coli K-12
    Gene Names: rpmD b3302 JW3264
    UniProtKB: Protein Feature View | Search PDB | P0AG51  
    Molecule: 50S ribosomal protein L32
    Polymer: 27 Type: protein Length: 57
    Chains: 0
    Organism: Escherichia coli K-12
    Gene Names: rpmF b1089 JW1075
    UniProtKB: Protein Feature View | Search PDB | P0A7N4  
    Molecule: 50S ribosomal protein L33
    Polymer: 28 Type: protein Length: 55
    Chains: 1
    Organism: Escherichia coli K-12
    Gene Names: rpmG b3636 JW3611
    UniProtKB: Protein Feature View | Search PDB | P0A7N9  
    Molecule: 50S ribosomal protein L34
    Polymer: 29 Type: protein Length: 46
    Chains: 2
    Organism: Escherichia coli K-12
    Gene Names: rpmH rimA ssaF b3703 JW3680
    UniProtKB: Protein Feature View | Search PDB | P0A7P5  
    Molecule: 50S ribosomal protein L35
    Polymer: 30 Type: protein Length: 65
    Chains: 3
    Organism: Escherichia coli K-12
    Gene Names: rpmI b1717 JW1707
    UniProtKB: Protein Feature View | Search PDB | P0A7Q1  
    Molecule: 50S ribosomal protein L36
    Polymer: 31 Type: protein Length: 38
    Chains: 4
    Organism: Escherichia coli K-12
    Gene Names: rpmJ b3299 JW3261
    UniProtKB: Protein Feature View | Search PDB | P0A7Q6  
    Molecule: 50S ribosomal protein L10
    Polymer: 32 Type: protein Length: 165
    Chains: 5
    Organism: Escherichia coli K-12
    Gene Names: rplJ b3985 JW3948
    UniProtKB: Protein Feature View | Search PDB | P0A7J3  
     
  •   Structure Validation Hide

    View the full validation report  

     

  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 2
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 3
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 4
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 5
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 6
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 7
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 8
    Scientific Name: Escherichia coli   Taxonomy   Expression System: Escherichia coli  
    Polymer: 9
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 10
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 11
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 12
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 13
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 14
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 15
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 16
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 17
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 18
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 19
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 20
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 21
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 22
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 23
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 24
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 25
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 26
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 27
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 28
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 29
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 30
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 31
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 32
    Scientific Name: Escherichia coli   Taxonomy    
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    MG
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    MG Mg
    MAGNESIUM ION
    ZN
    Search 
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    ZN Zn
    ZINC ION
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:NA2521
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Composite of PDB entries (4KIX and 4KIY)