Crystal Structure of a LSR-DNA Complex
DOI:10.2210/pdb4kis/pdb   NDB ID: NA2398
Primary Citation
  •   Molecular Description Hide
    Classification: Recombination/dna
    Structure Weight: 221190.72
    Molecule: Putative integrase [Bacteriophage A118]
    Polymer: 1 Type: protein Length: 328
    Chains: A, B, C, D
    Fragment: C-terminal domain
    Organism: Listeria innocua Clip11262
    Gene Name: int
    UniProtKB: Search PDB | Q928V6   Protein Feature View
    Molecule: DNA (26-MER)
    Polymer: 2 Type: dna Length: 26
    Chains: E, G, I, K
    Fragment: attP left half site top strand
    Details: attP half-site
    Molecule: DNA (26-MER)
    Polymer: 3 Type: dna Length: 26
    Chains: F, H, J, L
    Fragment: attP left half site bottom strand
    Details: attP half-site
  •   Structure Validation Hide

  • MolProbity Ramachandran Plot

  •   Related Citations in PDB Entry (REMARK 1) Hide
  •   Source Hide
    Polymer: 1
    Scientific Name: Listeria innocua   Taxonomy   Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
  •   Ligand Chemical Component Hide
  •   External Domain Annotations Hide
  •   Structural Biology Knowledgebase Data Hide
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:NA2398
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly 1       
Biological assembly 1 generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Rutherford, K.,  Yuan, P.,  Perry, K.,  Van Duyne, G.D.

    Deposition:   2013-05-02
    Release:   2013-07-10
    Last Modified (REVDAT):   2013-10-23
  •   Revision History    Hide
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  •   Experimental Details Hide
    Exp. Data:
      Structure Factors
    Resolution[Å]:   3.20
    R-Value: 0.239 (obs.)
    R-Free: 0.256
    Space Group: I 2 3
    Unit Cell:
      Length [Å] Angles [°]
    a = 290.75 α = 90.00 
    b = 290.75 β = 90.00 
    c = 290.75 γ = 90.00