4K4T

Poliovirus polymerase elongation complex (r4_form)

Structural Biology Knowledgebase: 4K4T SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.75 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.202

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4K4T

Classification: transferase / rna

Total Structure Weight: 135713.80


Macromolecule Entities
Molecule Chains Length Organism Details
RNA-directed RNA polymerase 3D-POL A, E 471 Enterovirus c EC#: 2.7.7.48 IUBMB
Fragment: unp residues 1749-2209
Mutation: L446D
Gene Name(s):
Macromolecule Entities
Molecule Chains Length Organism Details
RNA (5'-R(*AP*AP*GP*UP*CP*UP*CP*CP*AP*GP*GP*UP*CP*UP*CP*UP*CP*GP*GP*AP*AP*A)-3') B, F 22 synthetic
RNA (5'-R(P*UP*GP*UP*UP*CP*CP*GP*AP*GP*AP*GP*A)-3') C, G 12 synthetic
RNA (5'-R(*GP*GP*GP*AP*GP*AP*UP*GP*A)-3') D, H 9 synthetic

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A, B, E GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, E ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.75 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.202
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 59.40 α = 78.11
b = 59.25 β = 78.09
c = 97.46 γ = 78.85

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-04-12
  • Released Date: 2013-05-22
  • Deposition author(s): Gong, P., Peersen, O.B.

Revision History

  • 2013-07-03
    Type: Citation | Details: Citation update