Poliovirus polymerase elongation complex (r4_form)
DOI:10.2210/pdb4k4t/pdb   NDB ID: NA2347
4K4T
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transferase/rna
    Structure Weight: 135713.78
    Molecule: RNA-directed RNA polymerase 3D-POL
    Polymer: 1 Type: protein Length: 471
    Chains: A, E
    EC#: 2.7.7.48    3.4.22.28   
    Fragment: unp residues 1749-2209
    Mutation: L446D
    Organism: Human poliovirus 1 Mahoney
    UniProtKB: Protein Feature View | Search PDB | P03300  
    Molecule: RNA (5'-R(*AP*AP*GP*UP*CP*UP*CP*CP*AP*GP*GP*UP*CP*UP*CP*UP*CP*GP*GP*AP*AP*A)-3')
    Polymer: 2 Type: rna Length: 22
    Chains: B, F
    Molecule: RNA (5'-R(P*UP*GP*UP*UP*CP*CP*GP*AP*GP*AP*GP*A)-3')
    Polymer: 3 Type: rna Length: 12
    Chains: C, G
    Molecule: RNA (5'-R(*GP*GP*GP*AP*GP*AP*UP*GP*A)-3')
    Polymer: 4 Type: rna Length: 9
    Chains: D, H
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Human poliovirus 1   Taxonomy   Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 4
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    1RA6    
    3ol6    
    4K4S    
    4K4U    
    4K4V    
    4K4W    
    4K4X    
    4K4Y    
    4K4Z    
    4K50    
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    GOL
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    GOL C3 H8 O3
    GLYCEROL
    ZN
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    ZN Zn
    ZINC ION
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:NA2347
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Gong, P.,  Peersen, O.B.

    Deposition:   2013-04-12
    Release:   2013-05-22
    Last Modified (REVDAT):   2013-07-03
     
  •   Revision History    Hide
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    2013-07-03
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    Resolution[Å]:   2.75
    R-Value: 0.205 (obs.)
    R-Free: 0.262
    Space Group: P 1
    Unit Cell:
      Length [Å] Angles [°]
    a = 59.40 α = 78.11 
    b = 59.25 β = 78.09 
    c = 97.46 γ = 78.85