4K32

Crystal structure of geneticin bound to the leishmanial rRNA A-site

Structural Biology Knowledgebase: 4K32 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.244
  • R-Value Work: 0.206

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4K32

Classification: RNA / antibiotic

Total Structure Weight: 15705.99

Macromolecule Entities
Molecule Chains Length Organism Details
RNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*UP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP*UP*CP*GP*C)-3') A, B 23 Leishmania

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GET
Query on GET

A, B GENETICIN
G418 (Synonym)
C20 H40 N4 O10
BRZYSWJRSDMWLG-DJWUNRQOSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.244
  • R-Value Work: 0.206
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 33.08 α = 90.00
b = 90.76 β = 90.00
c = 47.01 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2013-04-10
  • Released Date: 2013-07-31
  • Deposition author(s): Shalev, M., Kondo, J., Adir, N., Baasov, T.

Revision History

  • 2013-09-04
    Type: Citation | Details: Citation update