Crystal structure of PDE6D in complex with the inhibitor rac-2
4JVB
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Protein Binding/inhibitor
    Structure Weight: 18146.00
    Molecule: Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta
    Polymer: 1 Type: protein Length: 152
    Chains: B
    Organism: Homo sapiens
    Gene Names: Gene View for PDE6D PDED
    UniProtKB: Protein Feature View | Search PDB | O43924  
     
  •   Structure Validation Hide

    View the full validation report  

     

  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    4JV6    
    4JV8    
    4JVF    
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    1M0
    Search 
    Download 
    1M0 C38 H32 N4 O
    1-benzyl-2-(4-{[(2R)-2-(2-phenyl-1H-benzimidazol- 1-yl)pent-4-en-1-yl]oxy}phenyl)-1H-benzimidazole
    1M0:4JVB
     
  •   External Ligand Annotations Hide
    Identifier   Binding Affinity (Sequence Identity %)
    1M0
    Search 
    Download 
    1M0
    N/Ain BindingDB
    Kd: 39 nM - data from BindingMOAD  
    Kd: 39 nM - data from PDBbind  
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
Downloadable viewers: