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Crystal structure of ms6564-dna complex
DOI:10.2210/pdb4jl3/pdb   NDB ID: NA2292
4JL3
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transcription/dna
    Structure Weight: 105111.25
    Molecule: Transcriptional regulator, TetR family
    Polymer: 1 Type: protein Length: 196
    Chains: A, B, C, D
    Organism: Mycobacterium smegmatis str. MC2 155
    Gene Names: MSMEG_6564 MSMEI_6387
    UniProtKB: Protein Feature View | Search PDB | A0R6I8  
    Molecule: DNA (31-MER)
    Polymer: 2 Type: dna Length: 31
    Chains: E
    Molecule: DNA (31-MER)
    Polymer: 3 Type: dna Length: 31
    Chains: F
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Mycobacterium smegmatis   Taxonomy   Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    4JKZ   
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    MSE
    Search 
    MSE C5 H11 N O2 Se MET lPeptideLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: NA2292
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Yang, S.F.,  Gao, Z.Q.,  He, Z.G.,  Dong, Y.H.

    Deposition:   2013-03-12
    Release:   2013-06-26
     
  •   Revision History    Hide
    No revisions since initial release
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.50
    R-Value: 0.224 (obs.)
    R-Free: 0.280
    Space Group: P 31
    Unit Cell:
      Length [Å] Angles [°]
    a = 100.95 α = 90.00 
    b = 100.95 β = 90.00 
    c = 99.86 γ = 120.00