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Human TDG N140A mutant IN A COMPLEX WITH 5-carboxylcytosine (5caC)
DOI:10.2210/pdb4jgc/pdb   NDB ID: NA2297
4JGC
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Hydrolase/dna
    Structure Weight: 40303.04
    Molecule: G/T mismatch-specific thymine DNA glycosylase
    Polymer: 1 Type: protein Length: 204
    Chains: A
    EC#: 3.2.2.29   
    Fragment: UNP residues 111-308
    Mutation: N140A
    Organism: Homo sapiens
    Gene Name: Gene View for TDG
    UniProtKB: Protein Feature View | Search PDB | Q13569  
    Molecule: oligonucleotide
    Polymer: 2 Type: dna Length: 28
    Chains: C
    Molecule: oligonucleotide containing 5-carboxylcytosine
    Polymer: 3 Type: dna Length: 28
    Chains: D
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

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  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    4FNC  HUMAN TDG IN A POST-REACTIVE COMPLEX WITH 5-HYDROXYMETHYLURACIL (5HMU) 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    1RT
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    1RT C5 H5 N3 O3
    4-amino-2-oxo-1,2-dihydropyrimidine-5-carboxylic acid
    1RT:4JGC
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    ORP
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    ORP C5 H11 O7 P saccharide
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: NA2297
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Hashimoto, H.,  Zhang, X.,  Cheng, X.

    Deposition:   2013-02-28
    Release:   2013-05-29
    Last Modified (REVDAT):   2013-07-03
     
  •   Revision History    Hide
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    2013-07-03
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.58
    R-Value: 0.232 (obs.)
    R-Free: 0.283
    Space Group: C 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 91.49 α = 90.00 
    b = 53.56 β = 95.10 
    c = 81.90 γ = 90.00