4J9T

Crystal structure of a putative, de novo designed unnatural amino acid dependent metalloprotein, northeast structural genomics consortium target OR61

Structural Biology Knowledgebase: 4J9T SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.166
  • R-Value Work: 0.135

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4J9T

Classification: Structural Genomics Unknown Function

Total Structure Weight: 38716.62

Macromolecule Entities
Molecule Chains Length Organism Details
designed unnatural amino acid dependent metalloprotein A 363 Micromonospora viridifaciens EC#: 3.2.1.18 IUBMB
Mutation: R68S, I69H, D92A, D131H, F155W, A156E, T226A, F234I, D259S, E260H, R276A, N311D
Gene Name(s): nedA

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ARS
Query on ARS

A ARSENIC
As
RBFQJDQYXXHULB-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.166
  • R-Value Work: 0.135
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 46.16 α = 90.00
b = 79.68 β = 90.00
c = 83.78 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-02-17
  • Released Date: 2013-03-27
  • Deposition author(s): Forouhar, F., Lew, S., Seetharaman, J., Mills, J.H., Khare, S.D., Everett, J.K., Baker, D., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)

Revision History

  • 2013-09-25
    Type: Citation | Details: Citation update