4J5S

TARG1 (C6orf130), Terminal ADP-ribose Glycohydrolase 1 ADP-ribose complex

Structural Biology Knowledgebase: 4J5S SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.175
  • R-Value Work: 0.137

Literature

Macromolecules
Sequence Display for 4J5S

Classification: HYDROLASE

Total Structure Weight: 69209.74

Macromolecule Entities
Molecule Chains Length Organism Details
O-acetyl-ADP-ribose deacetylase 1 A, B, C, D 146 Homo sapiens EC#: 3.5.1 IUBMB
Gene Name(s): OARD1 Gene View C6orf130
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZZC
Query on ZZC

A, B, C, D [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4- DIHYDROXY-OXOLAN-2-YL]METHYL [[(2R,3R)-2,3- DIHYDROXY-4-OXO-PENTOXY]-OXIDO-PHOSPHORYL] PHOSPHATE
C15 H21 N5 O13 P2
IZTPERUWNZCNNH-GHVQHMAVSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SBE
Query on SBE

B 1,3,2-DIOXABOROLAN-2-OL
C2 H5 B O3
ZBEDLGKSWBORBS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BO4
Query on BO4

A BORATE ION
B H4 O4
KCFLOKKYWBPKFN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A, B, C, D 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, B, C, D CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.175
  • R-Value Work: 0.137
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 73.38 α = 90.00
b = 56.22 β = 94.47
c = 73.79 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-02-09
  • Released Date: 2013-03-27
  • Deposition author(s): Schellenberg, M.J., Appel, C.D., Krahn, J., Williams, R.S.

Revision History

  • 2013-07-03
    Type: Citation | Details: Citation update
  • 2013-05-01
    Type: Citation | Details: Citation update