4J5R

TARG1 (C6orf130), Terminal ADP-ribose Glycohydrolase 1 bound to ADP-HPD

Structural Biology Knowledgebase: 4J5R SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.25 Å
  • R-Value Free: 0.153
  • R-Value Work: 0.118

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4J5R

Classification: hydrolase

Total Structure Weight: 34403.90

Macromolecule Entities
Molecule Chains Length Organism Details
O-acetyl-ADP-ribose deacetylase 1 A, B 146 Homo sapiens EC#: 3.5.1 IUBMB
Fragment: unp residues 11-152
Gene Name(s): OARD1 Gene View C6orf130

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
A1R
Query on A1R

A, B 5'-O-[(S)-{[(S)-{[(2R,3R,4S)-3,4-DIHYDROXYPYRROLIDIN- 2-YL]METHOXY}(HYDROXY)PHOSPHORYL]OXY}(HYDROXY)PHOSPHORYL]ADENOSINE
C15 H24 N6 O12 P2
NDQDTBCXPOIQGT-UHNJQBFTSA-N
Ligand Explorer
 
JSmol
CL
Query on CL

A, B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
JSmol
EDO
Query on EDO

A, B 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.25 Å
  • R-Value Free: 0.153
  • R-Value Work: 0.118
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 50.80 α = 90.00
b = 72.00 β = 90.00
c = 81.92 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-02-09
  • Released Date: 2013-03-27
  • Deposition author(s): Schellenberg, M.J., Appel, C.D., Krahn, J., Williams, R.S.

Revision History

  • 2013-07-03
    Type: Citation | Details: Citation update
  • 2013-05-01
    Type: Citation | Details: Citation update