POP-OUT | CLOSE
 
CSL (RBP-Jk) with corepressor KyoT2 bound to DNA
DOI:10.2210/pdb4j2x/pdb   NDB ID: NA2232
4J2X
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transcription/dna Binding Protein/dna
    Structure Weight: 120725.95
    Molecule: Recombining binding protein suppressor of hairless
    Polymer: 1 Type: protein Length: 427
    Chains: A, C
    Fragment: Core domain (UNP residues 53-474)
    Mutation: R115T
    Organism: Mus musculus
    Gene Names: Rbpj Igkjrb1 Igkrsbp Rbpsuh
    UniProtKB: Protein Feature View | Search PDB | P31266  
    Molecule: Four and a half LIM domains protein 1
    Polymer: 2 Type: protein Length: 28
    Chains: B, D
    Fragment: SEE REMARK 999
    Organism: Mus musculus
    Gene Name: Fhl1
    UniProtKB: Protein Feature View | Search PDB | P97447  
    Molecule: 5'-D(*AP*AP*TP*CP*TP*TP*TP*CP*CP*CP*AP*CP*AP*GP*T)-3'
    Polymer: 3 Type: dna Length: 15
    Chains: E, G
    Organism: Homo sapiens
    Molecule: 5'-D(*TP*TP*AP*CP*TP*GP*TP*GP*GP*GP*AP*AP*AP*GP*A)-3'
    Polymer: 4 Type: dna Length: 15
    Chains: F, H
    Organism: Homo sapiens
     
  •   Structure Validation Hide

    Download full validation report    

     

  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Mus musculus   Taxonomy   Common Name: Mouse Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Mus musculus   Taxonomy   Common Name: Mouse Expression System: Escherichia coli  
    Polymer: 3
    Scientific Name: Synthetic construct (Homo sapiens)   Taxonomy    
    Polymer: 4
    Scientific Name: Synthetic construct (Homo sapiens)   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    1TTU  Crystal Structure of CSL bound to DNA 
    2FO1  Crystal Structure of the CSL-Notch-Mastermind ternary complex bound to DNA 
    3BRD  CSL (Lag-1) bound to DNA with Lin-12 RAM peptide, P212121 
    3BRF  CSL (Lag-1) bound to DNA with Link-12 RAM peptide, C2221 
    3BRG  CSL (RBP-Jk) bound to DNA 
    3IAG  CSL (RBP-Jk) bound to HES-1 nonconsensus site 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    EDO
    Search 
    Download 
    EDO C2 H6 O2
    1,2-ETHANEDIOL
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: NA2232
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PISA (software)
Downloadable viewers:
 
 
 
  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Collins, K.J.,  Kovall, R.A.

    Deposition:   2013-02-05
    Release:   2013-11-06
    Last Modified (REVDAT):   2014-01-29
     
  •   Revision History    Hide
    Mouse over text for details
    2014-01-29
    Citation
    2014-01-15
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.85
    R-Value: 0.191 (obs.)
    R-Free: 0.231
    Space Group: P 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 62.16 α = 90.00 
    b = 97.29 β = 93.17 
    c = 144.10 γ = 90.00