4IXO

X-ray structure of NifS-like protein from Rickettsia africae ESF-5

Structural Biology Knowledgebase: 4IXO SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.205
  • R-Value Work: 0.162

Literature

Macromolecules
Sequence Display for 4IXO

Classification: PROTEIN BINDING

Total Structure Weight: 83579.38

Macromolecule Entities
Molecule Chains Length Organism Details
NifS-like protein A, B 380 Rickettsia africae Gene Name(s): spl1 RAF_ORF0675
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EDO
Query on EDO

A, B 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
LLP
Query on LLP
A, B L-PEPTIDE LINKING C14 H22 N3 O7 P LYS

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 57.02 α = 90.00
b = 91.02 β = 93.72
c = 72.62 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-01-27
  • Released Date: 2013-02-27
  • Deposition author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Revision History

No revisions since initial release