4ITU

Crystal structure of S-2-HYDROXYPROPYL COENZYME M DEHYDROGENASE (S-HPCDH) bound to S-HPC AND NADH

Structural Biology Knowledgebase: 4ITU SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.194
  • R-Value Work: 0.164

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4ITU

Classification: OXIDOREDUCTASE

Total Structure Weight: 111914.45

Macromolecule Entities
Molecule Chains Length Organism Details
Short-chain dehydrogenase/reductase SDR A, B, C, D 269 Xanthobacter autotrophicus Gene Name(s): Xaut_5073

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAI
Query on NAI

A, B, C, D 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
NADH (Synonym)
C21 H29 N7 O14 P2
BOPGDPNILDQYTO-NNYOXOHSSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
1HS
Query on 1HS

A, B, C, D 2-{[(2S)-2-hydroxypropyl]sulfanyl}ethanesulfonic acid
C5 H12 O4 S2
QWNJCCLFGYAGRK-YFKPBYRVSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.194
  • R-Value Work: 0.164
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 116.05 α = 90.00
b = 128.39 β = 90.00
c = 58.39 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-01-18
  • Released Date: 2013-03-27
  • Deposition author(s): Bakelar, J.W., Johnson, S.J.

Revision History

  • 2013-04-24
    Type: Citation | Details: Citation update