Yeast 20S proteasome in complex with the vinyl sulfone LU102
4INR
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Hydrolase/hydrolase Inhibitor
    Structure Weight: 731168.42
    Molecule: Proteasome component Y7
    Polymer: 1 Type: protein Length: 250
    Chains: A, O
    EC#: 3.4.25.1   
    Organism: Saccharomyces cerevisiae
    Gene Names: PRE8 PRS4 YML092C
    UniProtKB: Protein Feature View | Search PDB | P23639  
    Molecule: Proteasome component Y13
    Polymer: 2 Type: protein Length: 258
    Chains: B, P
    EC#: 3.4.25.1   
    Organism: Saccharomyces cerevisiae
    Gene Names: PRE9 PRS5 YGR135W
    UniProtKB: Protein Feature View | Search PDB | P23638  
    Molecule: Proteasome component PRE6
    Polymer: 3 Type: protein Length: 254
    Chains: C, Q
    EC#: 3.4.25.1   
    Organism: Saccharomyces cerevisiae
    Gene Names: PRE6 YOL038W
    UniProtKB: Protein Feature View | Search PDB | P40303  
    Molecule: Proteasome component PUP2
    Polymer: 4 Type: protein Length: 260
    Chains: D, R
    EC#: 3.4.25.1   
    Organism: Saccharomyces cerevisiae
    Gene Names: PUP2 DOA5 YGR253C G9155
    UniProtKB: Protein Feature View | Search PDB | P32379  
    Molecule: Proteasome component PRE5
    Polymer: 5 Type: protein Length: 234
    Chains: E, S
    EC#: 3.4.25.1   
    Organism: Saccharomyces cerevisiae
    Gene Names: PRE5 YMR314W YM9924.06
    UniProtKB: Protein Feature View | Search PDB | P40302  
    Molecule: Proteasome component C1
    Polymer: 6 Type: protein Length: 288
    Chains: F, T
    EC#: 3.4.25.1   
    Organism: Saccharomyces cerevisiae
    Gene Names: PRE10 Gene View for PRC1 PRS1 YOR362C O6650
    UniProtKB: Protein Feature View | Search PDB | P21242  
    Molecule: Proteasome component C7-alpha
    Polymer: 7 Type: protein Length: 252
    Chains: G, U
    EC#: 3.4.25.1   
    Organism: Saccharomyces cerevisiae
    Gene Names: SCL1 PRC2 PRS2 YGL011C
    UniProtKB: Protein Feature View | Search PDB | P21243  
    Molecule: Proteasome component PUP1
    Polymer: 8 Type: protein Length: 232
    Chains: H, V
    EC#: 3.4.25.1   
    Organism: Saccharomyces cerevisiae
    Gene Names: PUP1 YOR157C
    UniProtKB: Protein Feature View | Search PDB | P25043  
    Molecule: Proteasome component PUP3
    Polymer: 9 Type: protein Length: 205
    Chains: I, W
    EC#: 3.4.25.1   
    Organism: Saccharomyces cerevisiae
    Gene Names: PUP3 YER094C
    UniProtKB: Protein Feature View | Search PDB | P25451  
    Molecule: Proteasome component C11
    Polymer: 10 Type: protein Length: 198
    Chains: J, X
    EC#: 3.4.25.1   
    Organism: Saccharomyces cerevisiae
    Gene Names: PRE1 YER012W
    UniProtKB: Protein Feature View | Search PDB | P22141  
    Molecule: Proteasome component PRE2
    Polymer: 11 Type: protein Length: 212
    Chains: K, Y
    EC#: 3.4.25.1   
    Organism: Saccharomyces cerevisiae
    Gene Names: PRE2 DOA3 PRG1 YPR103W P8283.10
    UniProtKB: Protein Feature View | Search PDB | P30656  
    Molecule: Proteasome component C5
    Polymer: 12 Type: protein Length: 222
    Chains: L, Z
    EC#: 3.4.25.1   
    Organism: Saccharomyces cerevisiae
    Gene Names: PRE7 PRS3 PTS1 YBL041W YBL0407
    UniProtKB: Protein Feature View | Search PDB | P23724  
    Molecule: Proteasome component PRE4
    Polymer: 13 Type: protein Length: 233
    Chains: M, a
    EC#: 3.4.25.1   
    Organism: Saccharomyces cerevisiae
    Gene Names: PRE4 YFR050C
    UniProtKB: Protein Feature View | Search PDB | P30657  
    Molecule: Proteasome component PRE3
    Polymer: 14 Type: protein Length: 196
    Chains: N, b
    EC#: 3.4.25.1   
    Organism: Saccharomyces cerevisiae
    Gene Names: PRE3 YJL001W J1407
    UniProtKB: Protein Feature View | Search PDB | P38624  
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast  
    Polymer: 2
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast  
    Polymer: 3
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast  
    Polymer: 4
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast  
    Polymer: 5
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast  
    Polymer: 6
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast  
    Polymer: 7
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast  
    Polymer: 8
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast  
    Polymer: 9
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast  
    Polymer: 10
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast  
    Polymer: 11
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast  
    Polymer: 12
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast  
    Polymer: 13
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast  
    Polymer: 14
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast  
     
  •   Related PDB Entries Hide
    Identifier Details
    1RYP   Yeast 20S Proteasome 
    4INT   Yeast 20S Proteasome in complex with LU122 
    4INU   Yeast 20S Proteasome in complex with LU112 
     
  •   Biologically Interesting Molecules (BIRD) Hide
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    1G1
    Search 
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    1G1 C33 H49 N7 O5 S
    N3Phe-Leu-Leu-Phe(4-NH2CH2)-methyl vinyl sulfone, bound form
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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