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Crystal Structure of CENP-C in Complex with the Nucleosome Core Particle
DOI:10.2210/pdb4inm/pdb   NDB ID: NA2182
4INM
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Structural Protein/dna
    Structure Weight: 359903.95
    Molecule: Histone H3
    Polymer: 1 Type: protein Length: 98
    Chains: A, E, K, O
    Fragment: unp residues 41-133
    Organism: Drosophila melanogaster
    Gene Names: His3 His3:CG31613 CG31613 His3:CG33803 CG33803 His3:CG33806 CG33806 His3:CG33809 CG33809 His3:CG33812 CG33812 His3:CG33815 CG33815 His3:CG33818 CG33818 His3:CG33821 CG33821 His3:CG33824 CG33824 His3:CG33827 CG33827 His3:CG33830 CG33830 His3:CG33833 CG33833 His3:CG33836 CG33836 His3:CG33839 CG33839 His3:CG33842 CG33842 His3:CG33845 CG33845 His3:CG33848 CG33848 His3:CG33851 CG33851 His3:CG33854 CG33854 His3:CG33857 CG33857 His3:CG33860 CG33860 His3:CG33863 CG33863 His3:CG33866 CG33866
    UniProtKB: Protein Feature View | Search PDB | P02299  
    Molecule: Histone H4
    Polymer: 2 Type: protein Length: 79
    Chains: B, F, L, P
    Fragment: unp residues 25-103
    Organism: Drosophila melanogaster
    Gene Names: His4 H4 His4r H4r CG3379 His4:CG31611 CG31611 His4:CG33869 CG33869 His4:CG33871 CG33871 His4:CG33873 CG33873 His4:CG33875 CG33875 His4:CG33877 CG33877 His4:CG33879 CG33879 His4:CG33881 CG33881 His4:CG33883 CG33883 His4:CG33885 CG33885 His4:CG33887 CG33887 His4:CG33889 CG33889 His4:CG33891 CG33891 His4:CG33893 CG33893 His4:CG33895 CG33895 His4:CG33897 CG33897 His4:CG33899 CG33899 His4:CG33901 CG33901 His4:CG33903 CG33903 His4:CG33905 CG33905 His4:CG33907 CG33907 His4:CG33909 CG33909
    UniProtKB: Protein Feature View | Search PDB | P84040  
    Molecule: Histone H2A
    Polymer: 3 Type: protein Length: 102
    Chains: C, G, M, Q
    Fragment: unp residues 16-117
    Organism: Drosophila melanogaster
    Gene Names: His2A H2a His2A:CG31618 CG31618 His2A:CG33808 CG33808 His2A:CG33814 CG33814 His2A:CG33817 CG33817 His2A:CG33820 CG33820 His2A:CG33823 CG33823 His2A:CG33826 CG33826 His2A:CG33829 CG33829 His2A:CG33832 CG33832 His2A:CG33835 CG33835 His2A:CG33838 CG33838 His2A:CG33841 CG33841 His2A:CG33844 CG33844 His2A:CG33847 CG33847 His2A:CG33850 CG33850 His2A:CG33862 CG33862 His2A:CG33865 CG33865
    UniProtKB: Protein Feature View | Search PDB | P84051  
    Molecule: Histone H2B
    Polymer: 4 Type: protein Length: 90
    Chains: D, H, N, R
    Fragment: unp residues 33-122
    Organism: Drosophila melanogaster
    Gene Names: His2B His2B:CG17949 CG17949 His2B:CG33868 CG33868 His2B:CG33870 CG33870 His2B:CG33872 CG33872 His2B:CG33874 CG33874 His2B:CG33876 CG33876 His2B:CG33878 CG33878 His2B:CG33880 CG33880 His2B:CG33882 CG33882 His2B:CG33884 CG33884 His2B:CG33886 CG33886 His2B:CG33888 CG33888 His2B:CG33890 CG33890 His2B:CG33892 CG33892 His2B:CG33894 CG33894 His2B:CG33896 CG33896 His2B:CG33898 CG33898 His2B:CG33900 CG33900 His2B:CG33902 CG33902 His2B:CG33904 CG33904 His2B:CG33906 CG33906 His2B:CG33908 CG33908 His2B:CG33910 CG33910
    UniProtKB: Protein Feature View | Search PDB | P02283  
    Molecule: CENP-C
    Polymer: 5 Type: protein Length: 25
    Chains: U, V, W, X
    Organism: Rattus norvegicus
    Gene Names: Cenpc Cenpc1
    UniProtKB: Protein Feature View | Search PDB | Q66LH7  
    Molecule: DNA (147-MER)
    Polymer: 6 Type: dna Length: 147
    Chains: J, T
    Organism: Homo sapiens
    Molecule: DNA (147-MER)
    Polymer: 7 Type: dna Length: 147
    Chains: I, S
    Organism: Homo sapiens
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly Expression System: Escherichia coli  
    Polymer: 3
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly Expression System: Escherichia coli  
    Polymer: 4
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly Expression System: Escherichia coli  
    Polymer: 5
    Scientific Name: Synthetic construct (Rattus norvegicus)   Taxonomy    
    Polymer: 6
    Scientific Name: Homo sapiens   Taxonomy   Expression System: Escherichia coli  
    Polymer: 7
    Scientific Name: Homo sapiens   Taxonomy   Expression System: Escherichia coli  
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: NA2182
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors
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  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Jiang, J.S.,  Zhou, B.R.,  Bai, Y.,  Xiao, T.

    Deposition:   2013-01-05
    Release:   2013-06-12
     
  •   Revision History    Hide
    No revisions since initial release
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    Resolution[Å]:   3.50
    R-Value: 0.235 (work)
    R-Free: 0.284
    Space Group: P 21 21 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 102.99 α = 90.00 
    b = 176.10 β = 90.00 
    c = 208.85 γ = 90.00