POP-OUT | CLOSE
 
Crystal Structure of the N-Terminal Domain of HIV-1 Capsid in Complex With benzodiazepine Inhibitor
4INB
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Viral Protein/viral Protein Inhibitor
    Structure Weight: 16647.09
    Molecule: Gag protein
    Polymer: 1 Type: protein Length: 146
    Chains: A
    Fragment: UNP residues 133-278
    Organism: Human immunodeficiency virus 1
    Gene Name: gag
    UniProtKB: Protein Feature View | Search PDB | A9PKC6  
     
  •   Structure Validation Hide

    Download full validation report    

     

  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Human immunodeficiency virus 1   Taxonomy   Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    4E91  Crystal Structure of the N-Terminal Domain of HIV-1 Capsid in Complex With Inhibitor BD3 
    4E92  Crystal Structure of the N-Terminal Domain of HIV-1 Capsid in Complex With Inhibitor BM4 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    1F6
    Search 
    Download 
    1F6 C21 H20 F3 N3 O3
    (3Z)-3-{[(2-methoxyethyl)amino]methylidene}- 1-methyl-5-phenyl-7-(trifluoromethyl)-1H- 1,5-benzodiazepine-2,4(3H,5H)-dione
    1F6:4INB
    NA
    Search 
    Download 
    NA Na
    SODIUM ION
     
  •   External Ligand Annotations Hide
    Identifier   Binding Affinity (Sequence Identity %)
    1F6
    Search 
    Download 
    1F6
    N/Ain BindingDB
    IC50: 890 nM - data from BindingMOAD  
    N/Ain PDBbind
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
Downloadable viewers:
 
 
 
  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Coulombe, R.

    Deposition:   2013-01-04
    Release:   2013-02-27
    Last Modified (REVDAT):   2013-03-13
     
  •   Revision History    Hide
    Mouse over text for details
    2013-03-13
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   1.80
    R-Value: 0.231 (work)
    R-Free: 0.266
    Space Group: C 2 2 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 68.95 α = 90.00 
    b = 89.21 β = 90.00 
    c = 39.27 γ = 90.00