4IM3

Structure of Tank-Binding Kinase 1

Structural Biology Knowledgebase: 4IM3 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.34 Å
  • R-Value Free: 0.278
  • R-Value Work: 0.220

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4IM3

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 77815.70

Macromolecule Entities
Molecule Chains Length Organism Details
Serine/threonine-protein kinase TBK1 A 663 Homo sapiens EC#: 2.7.11.1 IUBMB
Fragment: residues 1 to 657
Mutation: D135N
Gene Name(s): TBK1 Gene View NAK
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BX7
Query on BX7

A N-(3-{[5-iodo-4-({3-[(thiophen-2-ylcarbonyl)amino]propyl}amino)pyrimidin- 2-yl]amino}phenyl)pyrrolidine-1-carboxamide
C23 H26 I N7 O2 S
VAVXGGRQQJZYBL-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
HG
Query on HG

A MERCURY (II) ION
Hg
BQPIGGFYSBELGY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.34 Å
  • R-Value Free: 0.278
  • R-Value Work: 0.220
  • Space Group: P 32 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 141.32 α = 90.00
b = 141.32 β = 90.00
c = 85.42 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-01-01
  • Released Date: 2013-03-06
  • Deposition author(s): Tu, D., Eck, M.J.

Revision History

  • 2013-03-20
    Type: Other | Details: Update text on related entry