4I78

Crystal structure of a subtype H17 hemagglutinin homologue from A/little yellow-shouldered bat/Guatemala/060/2010 (H17N10)

Structural Biology Knowledgebase: 4I78 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.18 Å
  • R-Value Free: 0.258
  • R-Value Work: 0.203

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4I78

Classification: VIRAL PROTEIN

Total Structure Weight: 115479.77

Macromolecule Entities
Molecule Chains Length Organism Details
Hemagglutinin HA1 A, B 328 Influenza a virus Gene Name(s): HA
Hemagglutinin HA2 C, D 181 Influenza a virus Mutation: A47G
Gene Name(s): HA

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FUC
Query on FUC

A ALPHA-L-FUCOSE
C6 H12 O5
SHZGCJCMOBCMKK-SXUWKVJYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.18 Å
  • R-Value Free: 0.258
  • R-Value Work: 0.203
  • Space Group: H 3 2

Unit Cell:

Length (Å) Angle (°)
a = 100.82 α = 90.00
b = 100.82 β = 90.00
c = 760.54 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-11-30
  • Released Date: 2013-01-16
  • Deposition author(s): Zhu, X., Wilson, I.A.

Revision History

  • 2013-05-22
    Type: Citation | Details: Citation update