4I1M

Crystal structure of the Legionella pneumophila GAP domain of LepB

Structural Biology Knowledgebase: 4I1M SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.199

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4I1M

Classification: HYDROLASE

Total Structure Weight: 102502.71

Macromolecule Entities
Molecule Chains Length Organism Details
LepB A, B, C 302 Legionella pneumophila Fragment: GAP domain (UNP residues 317-618)
Mutation: K457A, E458A, K460A
Gene Name(s): lepB lpg2490

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PEG
Query on PEG

A DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.199
  • Space Group: P 42 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 152.70 α = 90.00
b = 152.70 β = 90.00
c = 129.50 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-11-21
  • Released Date: 2013-01-16
  • Deposition author(s): Streller, A., Gazdag, E.M., Vetter, I.R., Goody, R.S., Itzen, A.

Revision History

  • 2013-02-20
    Type: Citation | Details: Citation update