4HYP

Pyrrolopyrimidine inhibitors of dna gyrase b and topoisomerase iv, part i: structure guided discovery and optimization of dual targeting agents with potent, broad-spectrum enzymatic activity.

Structural Biology Knowledgebase: 4HYP SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.294
  • R-Value Work: 0.195

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4HYP

Classification: Isomerase / Isomerase inhibitor

Total Structure Weight: 96954.80

Macromolecule Entities
Molecule Chains Length Organism Details
DNA gyrase subunit B A, B, C, D 215 Escherichia coli EC#: 5.99.1.3 IUBMB
Gene Name(s): gyrB acrB himB hisU nalC parA pcbA b3699 JW5625

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
1A1
Query on 1A1

A, B, C, D N-[7-(1H-imidazol-1-yl)-2-(pyridin-3-yl)[1,3]thiazolo[5,4- d]pyrimidin-5-yl]cyclopropanecarboxamide
C17 H13 N7 O S
GEKYZKWDAFEGJJ-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
MG
Query on MG

A, B, C, D MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.294
  • R-Value Work: 0.195
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 48.41 α = 90.00
b = 101.31 β = 101.60
c = 82.28 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-11-13
  • Released Date: 2013-02-13
  • Deposition author(s): Bensen, D.C., Creighton, C.J., Tari, L.W.

Revision History

  • 2013-02-27
    Type: Citation | Details: Citation update