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Dbh Ternary Complex (substrates partially disordered)
DOI:10.2210/pdb4hyk/pdb   NDB ID: NA2121
4HYK
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transferase/dna
    Structure Weight: 48232.67
    Molecule: DNA polymerase IV
    Polymer: 1 Type: protein Length: 354
    Chains: A
    EC#: 2.7.7.7   
    Organism: Sulfolobus acidocaldarius DSM 639
    Gene Names: dbh Saci_0554
    UniProtKB: Protein Feature View | Search PDB | Q4JB80  
    Molecule: DNA (5'-D(*GP*GP*GP*AP*AP*GP*CP*CP*GP*G)-3')
    Polymer: 2 Type: dna Length: 10
    Chains: P
    Details: Primer DNA
    Organism: synthetic construct
    Molecule: DNA (5'-D(*TP*TP*CP*CP*GP*CP*CP*CP*CP*GP*GP*CP*TP*TP*CP*CP*C)-3')
    Polymer: 3 Type: dna Length: 17
    Chains: T
    Details: Template DNA
    Organism: synthetic construct
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Sulfolobus acidocaldarius   Taxonomy   Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    4F4W  Dbh-Dpo4-Dpo4 #1 
    4F4X  Dbh-Dpo4-Dpo4 #2 
    4F4Y  Dbh-Dpo4-Dbh 
    4F4Z  Dpo4-Dpo4-Dbh 
    4F50  Dbh-Dbh-Dpo4 
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: NA2121
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Pata, J.D.,  Wilson, R.C.

    Deposition:   2012-11-13
    Release:   2013-01-02
    Last Modified (REVDAT):   2013-02-13
     
  •   Revision History    Hide
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    2013-02-13
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.80
    R-Value: 0.242 (obs.)
    R-Free: 0.313
    Space Group: P 41 21 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 122.64 α = 90.00 
    b = 122.64 β = 90.00 
    c = 69.92 γ = 90.00