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Crystal structure of KIT kinase domain with a small molecule inhibitor, PLX647
4HVS
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transferase/transferase Inhibitor
    Structure Weight: 38424.79
    Molecule: Mast/stem cell growth factor receptor Kit
    Polymer: 1 Type: protein Length: 335
    Chains: A
    EC#: 2.7.10.1   
    Fragment: KIT kinase domain with KID deleted
    Mutation: I563S, V569S, Y609Q, L631S, M651E, I662H, I690H, C691S, K693D, I756S, L762N, V825D, C844S, L890S, L912D, L923D
    Organism: Homo sapiens
    Gene Names: Gene View for KIT SCFR
    UniProtKB: Protein Feature View | Search PDB | P10721  
     
  •   Structure Validation Hide

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  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    647
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    647 C21 H17 F3 N4
    5-(1H-pyrrolo[2,3-b]pyridin-3-ylmethyl)-N- [4-(trifluoromethyl)benzyl]pyridin-2-amine
    647:4HVS
     
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  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Zhang, Y.,  Zhang, C.

    Deposition:   2012-11-06
    Release:   2013-03-27
    Last Modified (REVDAT):   2013-04-17
     
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    2013-04-17
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   1.90
    R-Value: 0.200 (obs.)
    R-Free: 0.227
    Space Group: C 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 110.74 α = 90.00 
    b = 81.86 β = 107.81 
    c = 50.06 γ = 90.00