4HV8

Crystal Structure of H2Db-H155A-NPM6I

Structural Biology Knowledgebase: 4HV8 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.236
  • R-Value Work: 0.181

Literature

Macromolecules
Sequence Display for 4HV8

Classification: Immune system

Total Structure Weight: 91244.80

Macromolecule Entities
Molecule Chains Length Organism Details
H-2 class I histocompatibility antigen, D-B alpha chain A, C 281 Mus musculus Mutation: H155A
Gene Name(s): H2-D1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Beta-2-microglobulin B, D 100 Mus musculus Gene Name(s): B2m
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
NPM6I variant peptide E, F 9 Influenza a virus Gene Name(s): NP
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, B, C, D SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.236
  • R-Value Work: 0.181
  • Space Group: P 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 83.92 α = 90.00
b = 72.93 β = 103.11
c = 86.38 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-11-05
  • Released Date: 2013-02-27
  • Deposition author(s): Gras, S., Twist, K.A., Rossjohn, J.

Revision History

  • 2013-04-24
    Type: Citation | Details: Citation update
  • 2013-03-27
    Type: Citation | Details: Citation update