4HTO

Crystal structure of the DBD domain of human DNA ligase IV Apo form

Structural Biology Knowledgebase: 4HTO SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.81 Å
  • R-Value Free: 0.259
  • R-Value Work: 0.207

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4HTO

Classification: LIGASE DNA binding protein

Total Structure Weight: 27535.74

Macromolecule Entities
Molecule Chains Length Organism Details
DNA ligase 4 A 240 Homo sapiens EC#: 6.5.1.1 IUBMB
Fragment: DNA binding domain
Gene Name(s): LIG4 Gene View

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PO4
Query on PO4

A PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.81 Å
  • R-Value Free: 0.259
  • R-Value Work: 0.207
  • Space Group: F 41 3 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 196.24 α = 90.00
b = 196.24 β = 90.00
c = 196.24 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-11-01
  • Released Date: 2012-12-26
  • Deposition author(s): De Ioannes, P.E., Aggarwal, A.K.

Revision History

  • 2013-01-16
    Type: Citation | Details: Citation update