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Crystal structure of LSD2-NPAC with H3(1-26)in space group P21
4HSU
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Oxidoreductase
    Structure Weight: 104740.08
    Molecule: Lysine-specific histone demethylase 1B
    Polymer: 1 Type: protein Length: 776
    Chains: A
    EC#: 1   
    Fragment: UNP residues 51-822
    Organism: Homo sapiens
    Gene Names: Gene View for KDM1B AOF1 C6orf193 LSD2
    UniProtKB: Protein Feature View | Search PDB | Q8NB78  
    Molecule: Putative oxidoreductase GLYR1
    Polymer: 2 Type: protein Length: 124
    Chains: B
    EC#: 1   
    Fragment: UNP residues 152-268
    Organism: Homo sapiens
    Gene Names: Gene View for GLYR1 HIBDL NP60
    UniProtKB: Protein Feature View | Search PDB | Q49A26  
    Molecule: Histone H3
    Polymer: 3 Type: protein Length: 30
    Chains: C
    Fragment: UNP residues 2-31
    Mutation: K4M
    Organism: Xenopus laevis
    Gene Names: hist1h3g H3l
    UniProtKB: Protein Feature View | Search PDB | Q92133  
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Spodoptera frugiperda  
    Polymer: 2
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 3
    Scientific Name: Synthetic construct (Xenopus laevis)   Taxonomy    
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    FAD
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    FAD C27 H33 N9 O15 P2
    FLAVIN-ADENINE DINUCLEOTIDE
    FAD:4HSU
    ZN
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    ZN Zn
    ZINC ION
     
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  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Chen, F.,  Dong, Z.,  Fang, J.,  Xu, Y.

    Deposition:   2012-10-30
    Release:   2013-02-13
    Last Modified (REVDAT):   2013-07-10
     
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    2013-07-10
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   1.99
    R-Value: 0.200 (obs.)
    R-Free: 0.232
    Space Group: P 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 62.75 α = 90.00 
    b = 89.48 β = 102.89 
    c = 88.35 γ = 90.00