S. pombe 3-methyladenine DNA glycosylase-like protein Mag2 bound to damaged DNA
DOI:10.2210/pdb4hsb/pdb   NDB ID: NA2101
4HSB
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Hydrolase/dna
    Structure Weight: 31414.98
    Molecule: Probable DNA-3-methyladenine glycosylase 2
    Polymer: 1 Type: protein Length: 217
    Chains: A
    EC#: 3.2.2.21   
    Organism: Schizosaccharomyces pombe 972h-
    Gene Names: mag2 SPBC23G7.11
    UniProtKB: Protein Feature View | Search PDB | O94468  
    Molecule: DNA (5'-D(P*GP*GP*AP*CP*TP*(3DR)P*AP*CP*GP*GP*G)-3')
    Polymer: 2 Type: dna Length: 11
    Chains: B
    Molecule: DNA (5'-D(P*CP*CP*CP*GP*TP*TP*AP*GP*TP*CP*C)-3')
    Polymer: 3 Type: dna Length: 11
    Chains: C
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Schizosaccharomyces pombe 972h-   Taxonomy   Common Name: Fission yeast Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    3S6I   Related DNA glycosylase from S. pombe (Mag1) 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    PEG
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    PEG C4 H10 O3
    DI(HYDROXYETHYL)ETHER
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    3DR
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    3DR C5 H11 O6 P dnaLinking
     
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  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:NA2101
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Adhikary, S.,  Eichman, B.F.

    Deposition:   2012-10-29
    Release:   2013-01-23
    Last Modified (REVDAT):   2014-01-01
     
  •   Revision History    Hide
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    2014-01-01
    Other
    2013-04-10
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    Resolution[Å]:   1.90
    R-Value: 0.194 (obs.)
    R-Free: 0.235
    Space Group: P 32 2 1
    Unit Cell:
      Length [Å] Angles [°]
    a = 54.89 α = 90.00 
    b = 54.89 β = 90.00 
    c = 153.46 γ = 120.00