4HLW

Targeting the Binding Function 3 (BF3) Site of the Human Androgen Receptor Through Virtual Screening. 2. Development of 2-((2-phenoxyethyl) thio)-1H-benzoimidazole derivatives.

Structural Biology Knowledgebase: 4HLW SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.174

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4HLW

Classification: TRANSCRIPTION

Total Structure Weight: 30616.03

Macromolecule Entities
Molecule Chains Length Organism Details
Androgen receptor A 256 Homo sapiens Fragment: UNP residues 664-919
Gene Name(s): AR Gene View DHTR NR3C4

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
TES
Query on TES

A TESTOSTERONE
C19 H28 O2
MUMGGOZAMZWBJJ-DYKIIFRCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
17W
Query on 17W

A 2-[(2-phenoxyethyl)sulfanyl]-1H-benzimidazole
C15 H14 N2 O S
UEYUFQWEHMSHIX-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
TES EC50: 2 - 3.16 nM (100) BindingDB
IC50: 2.7 - 3090.3 nM (100) BindingDB
Ki: 1.4 - 29 nM (100) BindingDB

N/A in BindingMoad

17W IC50: 4200 - 21000 nM (100) BindingDB

N/A in BindingMoad
IC50: 4200 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.174
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 55.19 α = 90.00
b = 66.30 β = 90.00
c = 73.01 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-10-17
  • Released Date: 2013-01-23
  • Deposition author(s): Ravi, S.N.M., Leblanc, E., Axerio-Cilies, P., Labriere, C., Frewin, K., Hassona, M.D.H., Lack, N.A., Han, F.Q., Guns, E.S., Young, R., Ban, F., Rennie, P.S., Cherkasov, A.

Revision History

  • 2013-02-27
    Type: Citation | Details: Citation update