4HD9

Crystal structure of native human MAdCAM-1 D1D2 domain

Structural Biology Knowledgebase: 4HD9 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.214
  • R-Value Work: 0.171

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4HD9

Classification: IMMUNE SYSTEM

Total Structure Weight: 22569.69

Macromolecule Entities
Molecule Chains Length Organism Details
Mucosal addressin cell adhesion molecule 1 A 209 Homo sapiens Mutation: D94N
Gene Name(s): MADCAM1 Gene View

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.214
  • R-Value Work: 0.171
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 64.48 α = 90.00
b = 99.99 β = 90.00
c = 69.67 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-10-02
  • Released Date: 2013-01-23
  • Deposition author(s): Springer, T., Yu, Y., Zhu, J.

Revision History

No revisions since initial release