4HC1

Crystal structure of a loop deleted mutant of human MAdCAM-1 D1D2 complexed with Fab 10G3

Structural Biology Knowledgebase: 4HC1 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.87 Å
  • R-Value Free: 0.253
  • R-Value Work: 0.200

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4HC1

Classification: IMMUNE SYSTEM

Total Structure Weight: 138359.83

Macromolecule Entities
Molecule Chains Length Organism Details
Mucosal addressin cell adhesion molecule 1 A, B 206 Homo sapiens Mutation: D94N, E148Q, ΔE172, ΔE173, ΔE174, ΔP175, ΔQ176, ΔG177, ΔQ178, ΔG179
Gene Name(s): MADCAM1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
10G3 heavy chain H, M 220 Mus musculus
10G3 light chain L, N 214 Mus musculus

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.87 Å
  • R-Value Free: 0.253
  • R-Value Work: 0.200
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 317.85 α = 90.00
b = 71.73 β = 93.29
c = 70.56 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-09-28
  • Released Date: 2013-01-23
  • Deposition author(s): Springer, T., Yu, Y., Zhu, J.

Revision History

No revisions since initial release