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Crystal structure of human Spindlin1 in complex with a histone H3K4(me3) peptide
4H75
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Gene Regulation
    Structure Weight: 28692.62
    Molecule: Spindlin-1
    Polymer: 1 Type: protein Length: 238
    Chains: A
    Fragment: UNP residues 27-262
    Organism: Homo sapiens
    Gene Names: Gene View for SPIN1 OCR SPIN
    UniProtKB: Protein Feature View | Search PDB | Q9Y657  
    Molecule: Histone H3
    Polymer: 2 Type: protein Length: 8
    Chains: B
    Fragment: H3K4(me3) peptide (UNP residues 2-9)
    Organism: Homo sapiens
    Gene Names: HIST2H3PS2 RP5-998N21.6-001
    UniProtKB: Protein Feature View | Search PDB | Q5TEC6  
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct (Homo sapiens)   Taxonomy    
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    GOL
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    GOL C3 H8 O3
    GLYCEROL
    NHE
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    NHE C8 H17 N O3 S
    2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID
    NHE:4H75
    SO4
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    SO4 O4 S
    SULFATE ION
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    M3L
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    M3L C9 H21 N2 O2 LYS lPeptideLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Yang, N.,  Wang, W.,  Wang, Y.,  Wang, M.,  Zhao, Q.,  Rao, Z.,  Zhu, B.,  Xu, R.M.

    Deposition:   2012-09-20
    Release:   2012-10-03
    Last Modified (REVDAT):   2012-11-14
     
  •   Revision History    Hide
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    2012-11-14
    Citation
    2012-10-31
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.10
    R-Value: 0.183 (obs.)
    R-Free: 0.218
    Space Group: P 21 21 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 122.43 α = 90.00 
    b = 42.69 β = 90.00 
    c = 50.31 γ = 90.00