DNA octamer D (GTseGTACAC) partially crosslinked with platinum
DOI:10.2210/pdb4h5a/pdb   NDB ID: NA2024
4H5A
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: DNA
    Structure Weight: 2715.70
    Molecule: DNA (5'-D(*GP*(2ST)P*GP*GP*CP*CP*AP*C)-3')
    Polymer: 1 Type: dna Length: 8
    Chains: A
    Details: short DNA 8mer with Se modification
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    4FP6   Se-DNA without platinum crosslinked 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    PT
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    PT Pt
    PLATINUM (II) ION
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    2ST
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    2ST C11 H17 N2 O8 P Se DT dnaLinking
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:NA2024
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Zhang, W.,  Coronado, G.,  Huang, Z.

    Deposition:   2012-09-18
    Release:   2012-10-03
     
  •   Revision History    Hide
    No revisions since initial release
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   1.42
    R-Value: 0.213 (obs.)
    R-Free: 0.237
    Space Group: P 43 21 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 42.31 α = 90.00 
    b = 42.31 β = 90.00 
    c = 24.31 γ = 90.00