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Crystal structure of LSD2-NPAC with tranylcypromine
4GUU
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Oxidoreductase
    Structure Weight: 101696.48
    Molecule: Lysine-specific histone demethylase 1B
    Polymer: 1 Type: protein Length: 776
    Chains: A
    EC#: 1   
    Fragment: UNP residues 51-822
    Organism: Homo sapiens
    Gene Names: Gene View for KDM1B AOF1 C6orf193 LSD2
    UniProtKB: Protein Feature View | Search PDB | Q8NB78  
    Molecule: Putative oxidoreductase GLYR1
    Polymer: 2 Type: protein Length: 124
    Chains: B
    EC#: 1   
    Fragment: UNP residues 152-268
    Organism: Homo sapiens
    Gene Names: Gene View for GLYR1 HIBDL NP60
    UniProtKB: Protein Feature View | Search PDB | Q49A26  
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Spodoptera frugiperda  
    Polymer: 2
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    FA9
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    FA9 C36 H43 N9 O16 P2
    [(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)- 3,4-dihydroxytetrahydrofuran-2-yl]methyl (2R,3S,4S)- 5-[(3R,3aS,7aR)-10,11-dimethyl-1,4,6-trioxo- 3-phenyl-2,3,5,6,7,7a-hexahydro-1H-benzo[g]pyrrolo[2,1- e]pteridin-8(4H)-yl]-2,3,4-trihydroxypentyl dihydrogen diphosphate
    ZN
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    ZN Zn
    ZINC ION
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Chen, F.,  Dong, Z.,  Fang, J.,  Yang, Y.,  Li, Z.,  Xu, Y.,  Yang, H.,  Wang, P.,  Xu, Y.

    Deposition:   2012-08-29
    Release:   2013-01-16
    Last Modified (REVDAT):   2013-07-10
     
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    2013-07-10
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    Resolution[Å]:   2.30
    R-Value: 0.200 (obs.)
    R-Free: 0.231
    Space Group: P 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 62.82 α = 90.00 
    b = 90.16 β = 104.20 
    c = 87.82 γ = 90.00