Crystal structure of LSD2 with H3
4GU0
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Oxidoreductase
    Structure Weight: 357722.24
    Molecule: Lysine-specific histone demethylase 1B
    Polymer: 1 Type: protein Length: 776
    Chains: A, B, C, D
    EC#: 1   
    Fragment: UNP residues 51-822
    Organism: Homo sapiens
    Gene Names: Gene View for KDM1B AOF1 C6orf193 LSD2
    UniProtKB: Protein Feature View | Search PDB | Q8NB78  
    Molecule: Histone H3.3
    Polymer: 2 Type: protein Length: 26
    Chains: E, F
    Fragment: UNP residues 2-27
    Mutation: K4M
    Organism: Homo sapiens
    Gene Names: Gene View for H3F3A H3.3A H3F3 PP781 Gene View for H3F3B H3.3B
    UniProtKB: Protein Feature View | Search PDB | P84243  
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Spodoptera frugiperda  
    Polymer: 2
    Scientific Name: Synthetic construct (Homo sapiens)   Taxonomy    
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    FAD
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    FAD C27 H33 N9 O15 P2
    FLAVIN-ADENINE DINUCLEOTIDE
    ZN
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    ZN Zn
    ZINC ION
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Chen, F.,  Yang, H.,  Dong, Z.,  Fang, J.,  Zhu, T.,  Gong, W.,  Xu, Y.

    Deposition:   2012-08-29
    Release:   2013-02-13
    Last Modified (REVDAT):   2013-07-10
     
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    2013-07-10
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   3.10
    R-Value: 0.205 (obs.)
    R-Free: 0.221
    Space Group: P 1
    Unit Cell:
      Length [Å] Angles [°]
    a = 101.84 α = 94.47 
    b = 108.93 β = 112.34 
    c = 120.82 γ = 117.95