Crystal structure of KPT251 in complex with CRM1-Ran-RanBP1
4GPT
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Protein Transport/inhibitor
    Structure Weight: 163639.53
    Molecule: GTP-binding nuclear protein Ran
    Polymer: 1 Type: protein Length: 216
    Chains: A
    Organism: Homo sapiens
    Gene Names: Gene View for RAN ARA24 OK/SW-cl.81
    UniProtKB: Protein Feature View | Search PDB | P62826  
    Molecule: Ran-specific GTPase-activating protein 1
    Polymer: 2 Type: protein Length: 140
    Chains: B
    Fragment: UNP residues 62-201
    Organism: Saccharomyces cerevisiae
    Gene Names: YRB1 CST20 Gene View for HTN1 SFO1 YDR002W YD8119.08
    UniProtKB: Protein Feature View | Search PDB | P41920  
    Molecule: Exportin-1
    Polymer: 3 Type: protein Length: 1060
    Chains: C
    Fragment: UNP residues 1-1058
    Mutation: T539C,Y1022C
    Organism: Saccharomyces cerevisiae
    Gene Names: CRM1 KAP124 Gene View for XPO1 YGR218W G8514
    UniProtKB: Protein Feature View | Search PDB | P30822  
     
  •   Structure Validation Hide

    View the full validation report  

     

  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast Expression System: Escherichia coli  
    Polymer: 3
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    4GMX   Nuclear Transport complex 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    51K
    Search 
    Download 
    51K C14 H9 F6 N5 O
    2-(2-{3-[3,5-bis(trifluoromethyl)phenyl]- 1H-1,2,4-triazol-1-yl}ethyl)-1,3,4-oxadiazole
    CL
    Search 
    Download 
    CL Cl
    CHLORIDE ION
    EDO
    Search 
    Download 
    EDO C2 H6 O2
    1,2-ETHANEDIOL
    GNP
    Search 
    Download 
    GNP C10 H17 N6 O13 P3
    PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
    GOL
    Search 
    Download 
    GOL C3 H8 O3
    GLYCEROL
    MG
    Search 
    Download 
    MG Mg
    MAGNESIUM ION
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
Downloadable viewers:
 
 
 
  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Sun, Q.,  Chook, Y.M.

    Deposition:   2012-08-21
    Release:   2012-09-05
    Last Modified (REVDAT):   2013-01-23
     
  •   Revision History    Hide
    Mouse over text for details
    2013-01-23
    Citation
    2012-10-17
    Entry title
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.22
    R-Value: 0.167 (obs.)
    R-Free: 0.210
    Space Group: P 43 21 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 105.94 α = 90.00 
    b = 105.94 β = 90.00 
    c = 305.48 γ = 90.00