4GPR

Crystal structure of EhUbc5, a ubiquitin conjugating enzyme from Entamoeba histolytica

Structural Biology Knowledgebase: 4GPR SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.202
  • R-Value Work: 0.171

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4GPR

Classification: LIGASE

Total Structure Weight: 17138.50

Macromolecule Entities
Molecule Chains Length Organism Details
Ubiquitin-conjugating enzyme family protein A 151 Entamoeba histolytica Gene Name(s): EHI_070750 EHI_083560

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CO
Query on CO

A COBALT (II) ION
Co
XLJKHNWPARRRJB-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.202
  • R-Value Work: 0.171
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 46.97 α = 90.00
b = 49.58 β = 90.00
c = 63.46 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-08-21
  • Released Date: 2012-12-12
  • Deposition author(s): Bosch, D.E., Siderovski, D.P.

Revision History

  • 2013-02-13
    Type: Citation | Details: Citation update
  • 2012-12-19
    Type: Citation | Details: Citation update