4GE8

OYE1-W116I complexed with (s)-Carvone

Structural Biology Knowledgebase: 4GE8 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.170
  • R-Value Work: 0.137

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4GE8

Classification: OXIDOREDUCTASE

Total Structure Weight: 46781.40

Macromolecule Entities
Molecule Chains Length Organism Details
NADPH dehydrogenase 1 A 400 Saccharomyces pastorianus EC#: 1.6.99.1 IUBMB
Mutation: W116I
Gene Name(s): OYE1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 6 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FMN
Query on FMN

A FLAVIN MONONUCLEOTIDE
RIBOFLAVIN MONOPHOSPHATE (Synonym)
C17 H21 N4 O9 P
FVTCRASFADXXNN-SCRDCRAPSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
1PE
Query on 1PE

A PENTAETHYLENE GLYCOL
PEG400 (Synonym)
C10 H22 O6
JLFNLZLINWHATN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
0WU
Query on 0WU

A (5S)-2-methyl-5-(prop-1-en-2-yl)cyclohex- 2-en-1-one
S-carvone (Synonym)
C10 H14 O
ULDHMXUKGWMISQ-VIFPVBQESA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.170
  • R-Value Work: 0.137
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 140.93 α = 90.00
b = 140.93 β = 90.00
c = 42.48 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-08-01
  • Released Date: 2012-08-29
  • Deposition author(s): Pompeu, Y.A., Stewart, J.D.

Revision History

  • 2013-10-09
    Type: Citation | Details: Citation update