4G35

Mcl-1 in complex with a biphenyl cross-linked Noxa peptide.

Structural Biology Knowledgebase: 4G35 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.192

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4G35

Classification: Apoptosis / Inhibitor

Total Structure Weight: 21158.95

Macromolecule Entities
Molecule Chains Length Organism Details
Induced myeloid leukemia cell differentiation protein Mcl-1 homolog A 165 Mus musculus Fragment: residues 152-308
Gene Name(s): Mcl1
Noxa BH3 peptide (cysteine-mediated cross-linked) B 21 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
4BP
Query on 4BP

B 4,4'-bis(bromomethyl)biphenyl
C14 H12 Br2
HMUGRILXVBKBID-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Biologically Interesting Molecules 1 Unique
ID Chains Name Type/Class 2D Diagram 3D Interactions
PRD_000921 (LYS,ARG,CYS,ASP,ASN,NH2,GLY,GLN,VAL,ACE,ALA,LEU,ILE,DCY) B Noxa BH3 peptide (cysteine-mediated cross-linked) Polypeptide /
Anticancer
Ligand Explorer Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.192
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 42.04 α = 90.00
b = 47.97 β = 90.00
c = 68.60 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-07-13
  • Released Date: 2012-12-05
  • Deposition author(s): Drake, E., Edwardraja, S., Lin, Q., Gulick, A.M.

Revision History

  • 2013-06-26
    Type: Linkage | Details: --