4G1Q

Crystal structure of HIV-1 reverse transcriptase (RT) in complex with Rilpivirine (TMC278, Edurant), a non-nucleoside rt-inhibiting drug

Structural Biology Knowledgebase: 4G1Q SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.51 Å
  • R-Value Free: 0.193
  • R-Value Work: 0.154

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4G1Q

Classification: TRANSFERASE HYDROLASE / INHIBITOR

Total Structure Weight: 115307.52

Macromolecule Entities
Molecule Chains Length Organism Details
Reverse transcriptase/ribonuclease H A 557 Human immunodeficiency virus 1 EC#: 2.7.7.49 IUBMB 2.7.7.7 IUBMB 3.1.26.13 IUBMB
Fragment: P66, UNP residues 600-1154
Mutation: K172A, K173A, C280S
Gene Name(s): gag-pol
p51 RT B 428 Human immunodeficiency virus 1 EC#: 2.7.7.49 IUBMB 2.7.7.7 IUBMB 3.1.26.13 IUBMB
Fragment: P51, UNP residues 600-1027
Mutation: C280S
Gene Name(s): gag-pol

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EDO
Query on EDO

A, B 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
JSmol
T27
Query on T27

A 4-{[4-({4-[(E)-2-cyanoethenyl]-2,6-dimethylphenyl}amino)pyrimidin- 2-yl]amino}benzonitrile
Rilpivirine (Synonym)
C22 H18 N6
YIBOMRUWOWDFLG-ONEGZZNKSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.51 Å
  • R-Value Free: 0.193
  • R-Value Work: 0.154
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 162.71 α = 90.00
b = 72.52 β = 100.84
c = 109.51 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-07-11
  • Released Date: 2013-02-06
  • Deposition author(s): Bauman, J.D., Patel D., Das, K., Arnold E.

Revision History

  • 2015-06-17
    Type: Non-polymer description | Details: --
  • 2013-03-06
    Type: Citation | Details: Citation update