4FZY

Exonuclease X in complex with 12bp blunt-ended dsDNA

Structural Biology Knowledgebase: 4FZY SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.241
  • R-Value Work: 0.219

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4FZY

Classification: Hydrolase / DNA

Total Structure Weight: 47546.44


Macromolecule Entities
Molecule Chains Length Organism Details
Exodeoxyribonuclease 10 A, B 175 Escherichia coli EC#: 3.1.11 IUBMB
Fragment: UNP residues 1-167
Gene Name(s): exoX yobC b1844 JW1833
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*TP*GP*TP*AP*GP*AP*TP*TP*CP*GP*AP*G)-3') C 12 synthetic
DNA (5'-D(P*CP*TP*CP*GP*AP*AP*TP*CP*TP*AP*CP*A)-3') D 12 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NA
Query on NA

A, B, C, D SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.241
  • R-Value Work: 0.219
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 37.28 α = 90.00
b = 78.89 β = 90.00
c = 146.67 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-07-08
  • Released Date: 2013-07-03
  • Deposition author(s): Wang, T., Sun, H., Cheng, F., Bi, L., Jiang, T.

Revision History

  • 2013-10-09
    Type: Citation | Details: Citation update