POP-OUT | CLOSE
 
Exonuclease X in complex with 12bp blunt-ended dsDNA
DOI:10.2210/pdb4fzy/pdb   NDB ID: NA1916
4FZY
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Hydrolase/dna
    Structure Weight: 47546.44
    Molecule: DNA (5'-D(*TP*GP*TP*AP*GP*AP*TP*TP*CP*GP*AP*G)-3')
    Polymer: 1 Type: dna Length: 12
    Chains: C
    Molecule: Exodeoxyribonuclease 10
    Polymer: 2 Type: protein Length: 175
    Chains: A, B
    EC#: 3.1.11   
    Fragment: UNP residues 1-167
    Organism: Escherichia coli K-12
    Gene Names: exoX yobC b1844 JW1833
    UniProtKB: Protein Feature View | Search PDB | P0AEK0  
    Molecule: DNA (5'-D(P*CP*TP*CP*GP*AP*AP*TP*CP*TP*AP*CP*A)-3')
    Polymer: 3 Type: dna Length: 12
    Chains: D
     
  •   Structure Validation Hide

    Download full validation report    

     

  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Escherichia coli   Taxonomy   Expression System: Escherichia coli  
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    4FZX   
    4FZZ   
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    NA
    Search 
    Download 
    NA Na
    SODIUM ION
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: NA1916
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
Downloadable viewers:
 
 
 
  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Wang, T.,  Sun, H.,  Cheng, F.,  Bi, L.,  Jiang, T.

    Deposition:   2012-07-08
    Release:   2013-07-03
    Last Modified (REVDAT):   2013-10-09
     
  •   Revision History    Hide
    Mouse over text for details
    2013-10-09
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.50
    R-Value: 0.220 (obs.)
    R-Free: 0.241
    Space Group: P 21 21 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 37.28 α = 90.00 
    b = 78.89 β = 90.00 
    c = 146.67 γ = 90.00