Exonuclease X in complex with 3' overhanging duplex DNA
DOI:10.2210/pdb4fzx/pdb   NDB ID: NA1915
4FZX
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Hydrolase/dna
    Structure Weight: 51481.61
    Molecule: DNA (5'-D(P*GP*TP*CP*AP*TP*TP*GP*TP*GP*GP*AP*TP*CP*CP*GP*AP*G)-3')
    Polymer: 1 Type: dna Length: 17
    Chains: B
    Molecule: DNA (5'-D(P*CP*GP*GP*AP*TP*CP*CP*AP*CP*AP*AP*TP*GP*AP*CP*CP*T)-3')
    Polymer: 2 Type: dna Length: 17
    Chains: A
    Molecule: Exodeoxyribonuclease 10
    Polymer: 3 Type: protein Length: 175
    Chains: C, D
    EC#: 3.1.11   
    Fragment: UNP residues 1-167
    Organism: Escherichia coli K-12
    Gene Names: exoX yobC b1844 JW1833
    UniProtKB: Protein Feature View | Search PDB | P0AEK0  
     
  •   Structure Validation Hide

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  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Escherichia coli   Taxonomy   Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    4FZY    
    4FZZ    
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    NA
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    NA Na
    SODIUM ION
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    MSE
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    MSE C5 H11 N O2 Se MET lPeptideLinking
     
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  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:NA1915
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Wang, T.,  Sun, H.,  Cheng, F.,  Bi, L.,  Jiang, T.

    Deposition:   2012-07-08
    Release:   2013-07-03
    Last Modified (REVDAT):   2013-10-09
     
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    2013-10-09
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.30
    R-Value: 0.184 (obs.)
    R-Free: 0.230
    Space Group: P 21 21 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 33.47 α = 90.00 
    b = 107.93 β = 90.00 
    c = 117.12 γ = 90.00