4FS4

Structure of BACE Bound to (S)-4-(3'-methoxy-[1,1'-biphenyl]-3-yl)-1,4-dimethyl-6-oxotetrahydropyrimidin-2(1H)-iminium

Structural Biology Knowledgebase: 4FS4 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.74 Å
  • R-Value Free: 0.233
  • R-Value Work: 0.205

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4FS4

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 87799.76

Macromolecule Entities
Molecule Chains Length Organism Details
Beta-secretase 1 A, B 390 Homo sapiens EC#: 3.4.23.46 IUBMB
Gene Name(s): BACE1 Gene View BACE KIAA1149

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
H24
Query on H24

A, B (6S)-2-amino-6-(3'-methoxybiphenyl-3-yl)- 3,6-dimethyl-5,6-dihydropyrimidin-4(3H)-one
C19 H21 N3 O2
LQOCXPOKEPYGTJ-IBGZPJMESA-N
Ligand Explorer
 
JSmol
TLA
Query on TLA

A, B L(+)-TARTARIC ACID
C4 H6 O6
FEWJPZIEWOKRBE-JCYAYHJZSA-N
Ligand Explorer
 
JSmol
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
H24 IC50: 840 nM (100) BindingDB
Ki: 270 nM (100) BindingDB

N/A in BindingMoad
Ki: 270 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.74 Å
  • R-Value Free: 0.233
  • R-Value Work: 0.205
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 86.50 α = 90.00
b = 90.36 β = 90.00
c = 131.15 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-06-26
  • Released Date: 2012-10-10
  • Deposition author(s): Strickland, C., Stamford, A.

Revision History

  • 2014-07-23
    Type: Citation | Details: Citation update