4FQT

Structure of AgamOBP1 Bound to 6-methyl-5-hepten-2-one

Structural Biology Knowledgebase: 4FQT SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.185

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4FQT

Classification: Odorant-Binding Protein

Total Structure Weight: 29736.29

Macromolecule Entities
Molecule Chains Length Organism Details
Anopheles Gambiae Odorant Binding protein 1 A, B 125 Anopheles gambiae Gene Name(s): AgamOBP1 OBP17 AgaP_AGAP003309 agCG48275

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PG4
Query on PG4

A, B TETRAETHYLENE GLYCOL
C8 H18 O5
UWHCKJMYHZGTIT-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
0VT
Query on 0VT

A, B 6-methylhept-5-en-2-one
6-methyl-5-hepten-2-one (Synonym)
C8 H14 O
UHEPJGULSIKKTP-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.185
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 32.77 α = 90.00
b = 68.99 β = 104.71
c = 64.55 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-06-25
  • Released Date: 2013-01-02
  • Deposition author(s): Murphy, E.J., Booth, J.C.

Revision History

  • 2013-03-20
    Type: Citation | Details: Citation update
  • 2013-01-23
    Type: Citation | Details: Citation update
  • 2013-01-09
    Type: Citation | Details: Citation update
  • 2013-01-02
    Type: Citation | Details: Citation update