4FH1

S. cerevisiae Ubc13-N79A

Structural Biology Knowledgebase: 4FH1 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.61 Å
  • R-Value Free: 0.246
  • R-Value Work: 0.219

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4FH1

Classification: LIGASE

Total Structure Weight: 17638.39

Macromolecule Entities
Molecule Chains Length Organism Details
Ubiquitin-conjugating enzyme E2 13 A 153 Saccharomyces cerevisiae EC#: 2.3.2.23 IUBMB
Mutation: N79A, C87S
Gene Name(s): UBC13 YDR092W YD6652.04

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NHE
Query on NHE

A 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID
N-CYCLOHEXYLTAURINE; CHES (Synonym)
C8 H17 N O3 S
MKWKNSIESPFAQN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.61 Å
  • R-Value Free: 0.246
  • R-Value Work: 0.219
  • Space Group: P 31 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 77.03 α = 90.00
b = 77.03 β = 90.00
c = 68.35 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-06-05
  • Released Date: 2013-01-09
  • Deposition author(s): Berndsen, C.E., Wolberger, C., Wiener, R.

Revision History

  • 2013-05-22
    Type: Citation | Details: Citation update