Crystal structure of the SV40 large T-antigen origin bining domain bound to Site I DNA
DOI:10.2210/pdb4fgn/pdb   NDB ID: NA1830
4FGN
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: DNA Binding Protein/dna
    Structure Weight: 44603.44
    Molecule: Large T antigen
    Polymer: 1 Type: protein Length: 132
    Chains: A, B
    EC#: 3.6.4   
    Fragment: origin binding domain, UNP residues 131-260
    Organism: Simian virus 40
    UniProtKB: Protein Feature View | Search PDB | P03070  
    Molecule: Site I DNA
    Polymer: 2 Type: dna Length: 23
    Chains: Z
    Organism: Simian virus 40
    Molecule: Site I DNA
    Polymer: 3 Type: dna Length: 23
    Chains: Y
    Organism: Simian virus 40
     
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  •   Source Hide
    Polymer: 1
    Scientific Name: Simian virus 40   Taxonomy   Common Name: Sv40 Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct (Simian virus 40)   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct (Simian virus 40)   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    2FUF   apo-large T-antigen origin binding domain 
    2ITL   large T-antigen origin binding domain in complex with Site II DNA (P1-P4) 
    2NTC   large T-antigen origin binding domain in complex with subset of Site II DNA (P1, P3) 
     
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  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:NA1830
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Meinke, G.,  Bohm, A.,  Bullock, P.A.

    Deposition:   2012-06-04
    Release:   2013-01-23
    Last Modified (REVDAT):   2013-02-27
     
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    2013-02-27
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    Resolution[Å]:   3.20
    R-Value: 0.191 (obs.)
    R-Free: 0.267
    Space Group: C 2 2 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 58.60 α = 90.00 
    b = 139.67 β = 90.00 
    c = 132.11 γ = 90.00